BEAT 1.31.0 – BS-Seq Epimutation Analysis Toolkit

BEAT 1.31.0

:: DESCRIPTION

BEAT implements all bioinformatics steps required for the quantitative high-resolution analysis of DNA methylation patterns from bisulfite sequencing data, including the detection of regional epimutation events, i.e. loss or gain of DNA methylation at CG positions relative to a reference.

::DEVELOPER

Single Cell Omics Germany

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 BEAT

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Mar 27. [Epub ahead of print]
Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data.
Akman K1, Haaf T, Gravina S, Vijg J, Tresch A.

Methy-pipe 2.02 – Integrated Pipeline for BS-seq data analysis

Methy-pipe 2.02

:: DESCRIPTION

Methy-Pipe is an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis

::DEVELOPER

Dr. Sun Hao’s Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 Methy-Pipe

:: MORE INFORMATION

Citation

Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
Jiang P, Sun K, Lun FM, Guo AM, Wang H, Chan KC, Chiu RW, Lo YM, Sun H.
PLoS One. 2014 Jun 19;9(6):e100360. doi: 10.1371/journal.pone.0100360.