BS Seeker 2.1.8

:: DESCRIPTION

BS Seeker (Bisulfite sequencing) performs accurate and fast mapping of bisulfite-treated short reads. It aligns Bisulfite-treated reads generated from the Cokus et al’s library protocol (with tags) or the Lister et al’s library protocol (with no tags).

::DEVELOPER

Matteo Pellegrini Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• Bowtie
• Python

:: DOWNLOAD

 BS Seeker

:: MORE INFORMATION

Citation:

BMC Genomics. 2013 Nov 10;14:774. doi: 10.1186/1471-2164-14-774.
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
Guo W, Fiziev P, Yan W, Cokus S, Sun X, Zhang MQ, Chen PY1, Pellegrini M.

BMC Bioinformatics. 2010 Apr 23;11:203.
BS Seeker: precise mapping for bisulfite sequencing.
Chen PY, Cokus SJ, Pellegrini M.