:: DESCRIPTION
GOBU (Gene Ontology Browsing Utility) is a browsing and manipulating tool for Post-Pipeline genetic data, especially useful for data with GO annotations.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lin WD, Chen YC, Ho JM, Hsiao CD.
GOBU: Toward an Integration Interface for Biological Objects.
Journal of Information Science and Engineering. 2006 22(1):19-29.
:: DESCRIPTION
MetaCrop is an Add-on to enable browsing of the content of the handcurated Metacrop database. Users can directly load hand-layouted pathway maps or metabolic network models to use for browsing, pathway exploration, data-mapping and analysis or use them for metabolic modelling. The user can also filter the pathway for species specific information, which will be visually highlighted.
::DEVELOPER
Chair for Life Science Informatics
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2012 Jan;40(Database issue):D1173-7. Epub 2011 Nov 15.
MetaCrop 2.0: managing and exploring information about crop plant metabolism.
Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker BH, Klapperstück M, Scholz U, Weise S.
:: DESCRIPTION
LookSeq supports multiple sequencing technologies, alignment sources, and viewing modes; low or high-depth read pileups; and easy visualization of putative single nucleotide and structural variation. The visible range, from whole chromosome to single base resolution, can be set manually or by scrolling or zooming the display with fast, on-the-fly rendering from the server-side alignment database. LookSeq uses a universal database for alignments of different sequencing technologies and algorithms. Sequence data from multiple sources can be viewed separately or aligned in a single display, facilitating direct comparison between datasets. LookSeq can also link to relevant external sites such as PubMed and other online analysis tools, via buttons or double-clicking on the displayed sequence annotation
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Res. 2009 Nov;19(11):2125-32. Epub 2009 Aug 13.
LookSeq: a browser-based viewer for deep sequencing data.
Manske HM, Kwiatkowski DP.
:: DESCRIPTION
Seqcrawler provides a complete open source search and store solution for labs or platforms needing to manage large amount of data/meta-data with a flexible and customizable web interface.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Seqcrawler: biological data indexing and browsing platform.
Sallou O, Bretaudeau A, Roult A.
BMC Bioinformatics. 2012 Jul 24;13:175. doi: 10.1186/1471-2105-13-175.
:: DESCRIPTION
EditGDS is a visual tool for browsing and editing Genomic Data Structure (GDS) files
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION