SnapGene Viewer 5.3.1 – Create, Browse, and Share richly Annotated DNA Sequence

 SnapGene Viewer 5.3.1

:: DESCRIPTION

SnapGene Viewer is revolutionary software that allows molecular biologists to create, browse, and share richly annotated DNA sequence files up to 1 Gb in length.

::DEVELOPER

SnapGene

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOSX

:: DOWNLOAD

 SnapGene Viewer

:: MORE INFORMATION

Prf-browser 2.6 – Browse and Display Gene Expression Profiles

Prf-browser 2.6

:: DESCRIPTION

Prf browser is the program to plot expression profiles and to browse Peak-mapper, Event-mapper data, profiles for extracted genes from directory “genes” created by Glob-mapper or profiles by the unique gene identifiers (i.e. d2378). Prf-browser requires profile data (*.rsz or *aln) and the ID file with gene names as well.

::DEVELOPER

Dmitri Papatsenko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Prf browser

:: MORE INFORMATION

Citation

Goltsev Y, Papatsenko D.
Time warping of evolutionary distant temporal gene expression data based on noise suppression
BMC Bioinformatics. 2009 Oct 26;10:353.

BAMseek 20110724 – Browse Large BAM and SAM Alignment Files

BAMseek 20110724

:: DESCRIPTION

Bamseek provides easy-to-use user interface to browse files too large to be opened with conventional text editors, such as TextEdit or Word. Supports SAM/BAM, VCF (BGZF-compressed and uncompressed), and FASTQ formats.

::DEVELOPER

Justin

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

 BAMseek

:: MORE INFORMATION

SequenceJuxtaposer 1.2 – Browse and Compare Gene Sequences

SequenceJuxtaposer 1.2

:: DESCRIPTION

SequenceJuxtaposer is open-source software for browsing and comparing gene sequences, using accordion drawing.It provides an immediate view of a set of sequences that a user can navigatethrough with a few clicks of a mouse.

::DEVELOPER

SequenceJuxtaposer Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

SequenceJuxtaposer

:: MORE INFORMATION

Citation:

Tamara Munzner, James Slack, Kristian Hildebrand and Katherine St. John
SequenceJuxtaposer: Fluid Navigation for Large-Scale Sequence Comparison in Context
Proc. German Conference on Bioinformatics 2004, pp 37-42