BD_BOX 1.2 – Brownian Dynamics Simulation

BD_BOX 1.2

:: DESCRIPTION

BD_BOX is an open source, scalable Brownian dynamics package for UNIX/LINUX platforms. BD_BOX uses flexible bead models to represent macromolecules. Molecules consist of spherical subunits connected with deformable bonds.

::DEVELOPER

Biomolecular Machines Laboratory

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Linux

:: DOWNLOAD

BD_BOX

:: MORE INFORMATION

Citation

Maciej Długosz, Paweł Zieliński Joanna Trylska,
Brownian dynamics simulations on CPU and GPU with BD_BOX,
J. Comput. Chem., 32:2734–2744, 2011

Brownmove 1.4 – Many-particle Brownian-Dynamics Simulation package

Brownmove 1.4

:: DESCRIPTION

“Brownmove” is a simulation package for Brownian Dynamics (BD) and Langevin Dynamics (LD) simulations of many-particle systems, which handles variable numbers of rigid and bead-spring particles with electrostatic, van-der-Waals, and hydrodynamic interactions.

::DEVELOPER

Chair of Computational Biology at the Saarland University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX
G++

:: DOWNLOAD

Brownmove

:: MORE INFORMATION

Citation

BMC Biophys. 2011 Apr 13;4:7. doi: 10.1186/2046-1682-4-7.
Many-particle Brownian and Langevin Dynamics Simulations with the Brownmove package.
Geyer T.

Browndye 2.0 – Brownian Dynamics Simulations on Large Biological Molecules.

Browndye 2.0

:: DESCRIPTION

BrownDye software package consists of 2 simulation programs and about 25 auxiliary programs for processing data. For now, it computes the 2nd-order rate constant of the encounter of two rigid bodies composed of spheres moving according to Brownian dynamics.

::DEVELOPER

McCammon Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Browndye

:: MORE INFORMATION

Citation

Huber, GA and McCammon, JA.
Browndye: A Software Package for Brownian Dynamics.
Computer Physics Communications 181, 1896-1905 (2010)