ABC-GWAS – Analysis of Breast Cancer GWAS variants

ABC-GWAS

:: DESCRIPTION

ABC-GWAS is an interactive database of functional annotation of estrogen receptor-positive breast cancer GWAS variants.

::DEVELOPER

Jun S. Song’s Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

ABC-GWAS

:: MORE INFORMATION

Citation

Manjunath M, Zhang Y, Zhang S, Roy S, Perez-Pinera P, Song JS.
ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants.
Front Genet. 2020 Jul 20;11:730. doi: 10.3389/fgene.2020.00730. PMID: 32765587; PMCID: PMC7379852.

Genefu 2.23.1 – Computation of Gene Expression-Based Signatures in Breast Cancer

Genefu 2.23.1

:: DESCRIPTION

Genefu contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

::DEVELOPER

Princess Margaret Bioinformatics and Computational Genomics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
R/Bioconductor

:: DOWNLOAD

Genefu

:: MORE INFORMATION

Citation:

Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
Gendoo DM, Ratanasirigulchai N, Schröder MS, Paré L, Parker JS, Prat A, Haibe-Kains B.
Bioinformatics. 2015 Nov 24. pii: btv693.

hiBRCApCR 1.0 – Predicting pCR for Breast Cancer Subtypes

hiBRCApCR 1.0

:: DESCRIPTION

hiBRCApCR is a software for accurate prediction of neoadjuvant chemotherapy pathological complete remission (pCR) for the four sub-types of breast cancer.

::DEVELOPER

Health Informatics Lab (HILab)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows
Python

:: DOWNLOAD

hiBRCApCR

:: MORE INFORMATION