Tag: Branching

ReTrace 1.03 – Infers Branching Metabolic Pathways

ReTrace 1.03

:: DESCRIPTION

ReTrace is a computational method for inferring branching pathways in genome-scale metabolic networks.

::DEVELOPER

Esa Pitkänen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • Python

:: DOWNLOAD

 ReTrace

:: MORE INFORMATION

Citation:

BMC Syst Biol. 2009 Oct 29;3:103. doi: 10.1186/1752-0509-3-103.
Inferring branching pathways in genome-scale metabolic networks.
Pitkänen E1, Jouhten P, Rousu J.

PatternBranching / ProfileBranching – Finding Subtle Motifs by Branching from Sample Strings

PatternBranching / ProfileBranching

:: DESCRIPTION

PatternBranching and ProfileBranching are softwares for finding subtle motifs by branching from sample strings

::DEVELOPER

 Alkes Price , Sriram Ramabhadran  and Pavel A. Pevzner

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 PatternBranching / ProfileBranching

:: MORE INFORMATION

Citation:

Price A., Ramabhadran S., Pevzner P.A. 2003.
Finding subtle motifs by branching from sample strings.
Bioinformatics. 2003 Oct;19 Suppl 2:ii149-55.