Tag: BRAIN

Brain 1.5.1 – Library for Biomedical Knowledge Manipulation

Brain 1.5.1

:: DESCRIPTION

Brain helps you to quickly and easily buid OWL ontologies and knowledge bases.

::DEVELOPER

Samuel Croset

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • Java

:: DOWNLOAD

 Brain

:: MORE INFORMATION

Citation

Bioinformatics. 2013 May 1;29(9):1238-9. doi: 10.1093/bioinformatics/btt109. Epub 2013 Mar 16.
Brain: biomedical knowledge manipulation.
Croset S1, Overington JP, Rebholz-Schuhmann D.

HDBIG – High Dimensional Brain Imaging Genomics

HDBIG

:: DESCRIPTION

HDBIG is a collection of software tools for high dimensional brain imaging genomics.

HDBIG-SR is an HDBIG toolkit focusing on Sparse Regression.

HDBIG-SCCA is an HDBIG toolkit focusing on Sparse Canonical Correlation Analysis (SCCA).

::DEVELOPER

ShenLab

n/a

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • MatLab

:: DOWNLOAD

 HDBIG-SR , HDBIG-SCCA

:: MORE INFORMATION

Citation

Yan J, Du L, Kim S, Risacher SL, Huang H, Moore JH, Saykin AJ, Shen L, for the ADNI (2014)
Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm.
Bioinformatics, Vol. 30 ECCB 2014, pages i564–i571.

Yan J, Huang H, Kim S, Moore JH, Saykin AJ, Shen L, for the ADNI (2014)
Joint identification of imaging and proteomics biomarkers of Alzheimer’s disease using network-guided sparse learning.
ISBI’14:  IEEE Int. Sym. on Biomedical Imaging, pp 665-668, Beijing, China, 28 April – 2 May, 2014.

BRAIN 1.0.5 /BRAIN Library 1.5 – Biologically Relevant Analysis of Interaction Networks

BRAIN 1.0.5 /BRAIN Library 1.5

:: DESCRIPTION

The BRAIN (Biologically Relevant Analysis of Interaction Networks) is a set of algorithms for predicting and analyzing protein domain-peptide ligand interactions based on experimentally known binding evidence (e.g. from protein chip or phage display experiments). BRAIN can be accessed as a Cytoscape plugin which reads peptide binding profiles and generates interactions displayed as a Cytoscape network.

::DEVELOPER

Bader Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 BRAIN /BRAIN Library

:: MORE INFORMATION