:: DESCRIPTION
CellSegmenter is a software application which allowed to vary and set intensity thresholds, and select cells using simple point-and-click operations.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Chris Bakal, John Aach, George M. Church, and Norbert Perrimon (2007)
Quantitative Morphological Signatures Define Local Signaling Networks Regulating Cell Morphology,
Science 316:1753
:: DESCRIPTION
preciseTAD provides functions to predict the location of boundaries of topologically associated domains (TADs) and chromatin loops at base-level resolution.
::DEVELOPER
Mikhail Dozmorov <mikhail.dozmorov at gmail.com>
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Stilianoudakis SC, Marshall MA, Dozmorov MG.
preciseTAD: A transfer learning framework for 3D domain boundary prediction at base-pair resolution.
Bioinformatics. 2021 Nov 6:btab743. doi: 10.1093/bioinformatics/btab743. Epub ahead of print. PMID: 34741515.
:: DESCRIPTION
sephaCe ( stands for “see phase of cells”,) is an open-source tool for automatic segmentation of adherent biological cell boundaries from brightfield microscopy images.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DomEx is an Extending Protein domain predictors to detect discontinuous domains
::DEVELOPER
zhidong xue (zdxue@hust.edu.cn)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Extending Protein Domain Boundary Predictors to Detect Discontinuous Domains.
Xue Z, Jang R, Govindarajoo B, Huang Y, Wang Y.
PLoS One. 2015 Oct 26;10(10):e0141541. doi: 10.1371/journal.pone.0141541.
