CpGviewer 20110406 – Interactive Data Analysis in Bisulphite DNA Sequencing

CpGviewer 20110406

:: DESCRIPTION

CpGviewer is designed to speed up the characterisation of mammalian CpG islands by aligning DNA sequences from bisulphite-modified DNA to the genomic sequence of the CpG island. While simple in principle, this is a tedious error-prone task when done manually

::DEVELOPER

Ian’s DNA@Leeds

:: SCREENSHOTS

CpGviewer

:: REQUIREMENTS

  • Windows
  • Microsoft .NET framework version 2.0

:: DOWNLOAD

 CpGviewer

:: MORE INFORMATION

Citation

Carr IM, Valleley EMA, Cordery SF, Markham AF & Bonthron DT (2007).
Sequence analysis and editing for bisulphite genomic sequencing projects.
Nucleic Acids Res., 35:e79.

WGBSSuite 0.4 – Simulating Whole Genome Bisulphite Sequencing data

WGBSSuite 0.3

:: DESCRIPTION

WGBSSuite is a flexible stochastic simulation tool that generates single-base resolution DNA methylation data genome-wide.

::DEVELOPER

WGBSSuite team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
  • Bsmooth
  • MethylSig

:: DOWNLOAD

  WGBSSuite

:: MORE INFORMATION

Citation

WGBSSuite: Simulating Whole Genome Bisulphite Sequencing data and benchmarking differential DNA methylation analysis tools.
Rackham OJ, Dellaportas P, Petretto E, Bottolo L.
Bioinformatics. 2015 Mar 15. pii: btv114.