:: DESCRIPTION
BWASP/R is a complete workflow that allows efficient, scalable and entirely reproducible analyses of raw DNA methylation sequencing data.
::DEVELOPER
The Brendel Group @ Indiana University
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Morandin C, Brendel VP.
Tools and applications for integrative analysis of DNA methylation in social insects.
Mol Ecol Resour. 2021 Dec 3. doi: 10.1111/1755-0998.13566. Epub ahead of print. PMID: 34861105.
:: DESCRIPTION
RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (SNVs and CNVs) and to perform Bisulfite-seq analyses automatically.
::DEVELOPER
Miriam Rubio-Camarillo at Spanish National Cancer Research Centre (CNIO)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Jul 1;29(13):1687-9. doi: 10.1093/bioinformatics/btt203. Epub 2013 Apr 28.
RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses.
Rubio-Camarillo M, Gómez-López G, Fernández JM, Valencia A, Pisano DG.
:: DESCRIPTION
BS-SNPer is an ultrafast and memory-efficient package, a program for BS-Seq variation detection from alignments in standard BAM/SAM format using approximate Bayesian modeling.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BS-SNPer: SNP calling in Bisulfite-seq data.
Gao S, Zou D, Mao L, Liu H, Song P, Chen Y, Zhao S, Gao C, Li X, Gao Z, Fang X, Yang H, Ørntoft TF, Sørensen KD, Bolund L.
Bioinformatics. 2015 Aug 28. pii: btv507.
