Bisque 0.5.8 – Platform for Bioimage Analysis & Management

Bisque 0.5.8

:: DESCRIPTION

Bisque (Bio-Image Semantic Query User Environment) was developed for the exchange and exploration of biological images. The Bisque system supports several areas useful for imaging researchers from image capture to image analsysis and querying. The bisque system is centered around a database of images and metadata. Search and comparison of datasets by image data and content is supported. Novel semantic analyses are integrated into the system allowing high level semantic queries and comparison of image content.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Bisque

:: MORE INFORMATION

Citation:

Kristian Kvilekval, Dmitry Fedorov, Boguslaw Obara, Ambuj Singh and B.S. Manjunath,
Bisque: A Platform for Bioimage Analysis and Management
Bioinformatics, vol. 26, no. 4, pp. 544-552, Feb. 2010.

BISQUE 1.0 – a human Genomic, Proteomic, and Transcriptomic Conversion tool

BISQUE 1.0

:: DESCRIPTION

BISQUE (The Biological Sequence Exchange) is a bioinformatics tool enabling locus and variant-specific conversion among human gene, transcript, and protein identifiers from several popular databases.

::DEVELOPER

Yu Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

  BISQUE

:: MORE INFORMATION

Citation

BISQUE: locus- and variant-specific conversion of genomic, transcriptomic, and proteomic database identifiers.
Meyer MJ, Geske P, Yu H.
Bioinformatics. 2016 Jan 23. pii: btw043.

BQJavaLib 0.1 – Java Library for Matlab to Direct Access to the Bisque DataBase System.

BQJavaLib 0.1

:: DESCRIPTION

BQJavaLib is a Java library for Matlab that allows direct access to the Bisque DataBase system.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BQJavaLib

:: MORE INFORMATION

Browse source on-line

BQMatlabToolbox 0.1 – Direct Access to the Bisque DataBase System

BQMatlabToolbox 0.1

:: DESCRIPTION

BQMatlabToolbox allows direct access to the Bisque DataBase system.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BQMatlabToolbox

:: MORE INFORMATION

Browse source on-line

BQBisqueJ 0.1 – ImageJ plugin for Bisque DataBase System

BQBisqueJ 0.1

:: DESCRIPTION

BQBisqueJ is an ImageJ plugin that allows direct access to the Bisque DataBase system.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BQBisqueJ ; Source Code

:: MORE INFORMATION

BQBisqueJ requires adding a Bisque JAR file to ImageJ. In ImageJ 1.31 or later, this is done by copying the Bisque JAR file into the plugins folder or an immediate subfolder of the plugins folder, then restarting ImageJ.

Exit mobile version