Tag: Biomedical Literature

miRSel – Automated Extraction of Associations between microRNAs and Genes from the Biomedical Literature

miRSel

:: DESCRIPTION

miRSel is resource for miRNA-gene associations. miRSel offers the currently largest collection of literature derived miRNA-gene associations.

::DEVELOPER

Institut für Informatik, Ludwig-Maximilians-Universität München

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2010 Mar 16;11:135. doi: 10.1186/1471-2105-11-135.
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.
Naeem H, Küffner R, Csaba G, Zimmer R.

tmVar 2.0 – Text Mining approach for Extracting Sequence Variants in Biomedical Literature

tmVar 2.0

:: DESCRIPTION

tmVar is a text-mining approach based on conditional random field (CRF) for extracting a wide range of sequence variants in both protein and gene levels according to a standard sequence variants nomenclature developed by the human genome variation society (HGVS).

::DEVELOPER

Zhiyong Lu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 tmVar

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jun 1;29(11):1433-9. doi: 10.1093/bioinformatics/btt156. Epub 2013 Apr 5.
tmVar: a text mining approach for extracting sequence variants in biomedical literature.
Wei CH, Harris BR, Kao HY, Lu Z.