Mystic – Inferred Biomass Biogeochemical Model of Mystic Lake

Mystic

:: DESCRIPTION

Mystic is a Matlab program (with supporting Python scripts) that runs a conceptual, quantitative simulation of the biogeochemistry of Mystic Lake, a polluted, dimictic lake outside Boston. The model was designed to predict the overall vertical spatial distribution of major chemical species and microbial metabolisms in the lake.

::DEVELOPER

The Alm lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • MatLab
  • Python

:: DOWNLOAD

Mystic

:: MORE INFORMATION

Citation

Preheim SP, Olesen SW, Spencer SJ, Materna A, Varadharajan C, Blackburn M, Friedman J, Rodríguez J, Hemond H, Alm EJ.
Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem.
Nat Microbiol. 2016 Aug 15;1(9):16130. doi: 10.1038/nmicrobiol.2016.130. PMID: 27562262.