Browndye 2.0 – Brownian Dynamics Simulations on Large Biological Molecules.

Browndye 2.0

:: DESCRIPTION

BrownDye software package consists of 2 simulation programs and about 25 auxiliary programs for processing data. For now, it computes the 2nd-order rate constant of the encounter of two rigid bodies composed of spheres moving according to Brownian dynamics.

::DEVELOPER

McCammon Group

 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  Browndye

:: MORE INFORMATION

Citation

Huber, GA and McCammon, JA.
Browndye: A Software Package for Brownian Dynamics.
Computer Physics Communications 181, 1896-1905 (2010)

Tessellator 1.0 – Software for Tessellation of 3D Volume in Biological Molecule

Tessellator 1.0

:: DESCRIPTION

Tessellator is an application for the tessellation of 3D volume in and around biological molecules. It creates Tcl script files which are run within VMD to visualize volumes in context with their associated molecular structures.

::DEVELOPER

The Luthey-Schulten Group – University of Illinois at Urbana-Champaign

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • VMD

:: DOWNLOAD

 Tessellator for Win, for MacOsX/Linux

:: MORE INFORMATION

Citation

J Eargle, and Z. Luthey-Schulten,
Visualizing the Dual Space of Biological Molecules.
Comp. Biol. Chem., 30:219, 2006.

3D BioMolecula ScreenSaver 1.1 – 3D Models of Biological Molecules

3D BioMolecula ScreenSaver 1.1

:: DESCRIPTION

BioMolecula 3D ScreenSaver shows real 3D models of biological molecules in dynamics. Your screen will look like screens of computers in science fiction films! You may choose one molecule from six available, rotation axis and speed.

Six molecules are available in the current version: four prototypes of DNA (Deoxyribonucleis Acid – storage of genetics information) and two proteins – Hemoglobine I Monomeric (Oxygen transport protein) and Cytochrome C 550 (this protein has wide range of functions). In further versions we plan to add some new molecule models.

::DEVELOPER

Terminal Studio

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

3D BioMolecula ScreenSaver

:: MORE INFORMATION

N/A