BrownDye software package consists of 2 simulation programs and about 25 auxiliary programs for processing data. For now, it computes the 2nd-order rate constant of the encounter of two rigid bodies composed of spheres moving according to Brownian dynamics.
Tessellator is an application for the tessellation of 3D volume in and around biological molecules. It creates Tcl script files which are run within VMD to visualize volumes in context with their associated molecular structures.
BioMolecula 3D ScreenSaver shows real 3D models of biological molecules in dynamics. Your screen will look like screens of computers in science fiction films! You may choose one molecule from six available, rotation axis and speed.
Six molecules are available in the current version: four prototypes of DNA (Deoxyribonucleis Acid – storage of genetics information) and two proteins – Hemoglobine I Monomeric (Oxygen transport protein) and Cytochrome C 550 (this protein has wide range of functions). In further versions we plan to add some new molecule models.