MOTHUR 1.45.3 – Bioinformatics Platform of Microbial Ecology Community

MOTHUR 1.45.3

:: DESCRIPTION

MOTHUR is bioinformatics package which includes functions from DOTUR, SONS, TreeClimber, S-Libshuff and Unifrac. MOTHUR aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data.

::DEVELOPER

MOTHUR Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows /MacOsX

:: DOWNLOAD

MOTHUR

:: MORE INFORMATION

Citation

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Appl Environ Microbiol. 2009 Dec;75(23):7537-41. Epub 2009 Oct 2.

PREDAC-H3 20200907 – Bioinformatics platform for Antigenic Surveillance of human Influenza H3N2 Virus

PREDAC-H3 20200907

:: DESCRIPTION

PREDAC-H3 is a computational platform for antigenic surveillance of human influenza A(H3N2) virus based on the sequence of surface protein hemagglutinin (HA).

::DEVELOPER

PREDAC-H3 team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences.
Peng Y, Yang L, Li H, Zou Y, Deng L, Wu A, Du X, Wang D, Shu Y, Jiang T.
Bioinformatics. 2016 Apr 12. pii: btw185.

LiSSI 1.0 – Integrated Bioinformatics Platform for Genomic Island Analysis

LiSSI 1.0

:: DESCRIPTION

LiSSI (Life-Style-Specific-Islands) is a java tool for predicting life-style-specific genomic islands through evolutionary conservation. It is divided into three sequentially executed modules: evolutionary sequence analysis, island detection, and machine learning.

::DEVELOPER

Baumbach lab

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

LiSSI

:: MORE INFORMATION

Citation

J Integr Bioinform. 2017 Jul 5;14(2). pii: /j/jib.2017.14.issue-2/jib-2017-0010/jib-2017-0010.xml. doi: 10.1515/jib-2017-0010.
LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis.
Barbosa E, Röttger R, Hauschild AC, de Castro Soares S, Böcker S, Azevedo V, Baumbach J.