MINTIA v1.0 – Metagenomic INsertT BIoinformatic Annotation

MINTIA v1.0

:: DESCRIPTION

MINTIA is a software package enabling biologists to easily generate and analyze large metagenomic sequence sets, retrieved after activity-based screening. It filters reads, performs assembly, removes cloning vector, annotates open reading frames and generates user friendly reports as well as files ready for submission to international sequence repositories.

::DEVELOPER

MINTIA team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web server
Perl

:: DOWNLOAD

MINTIA

:: MORE INFORMATION

Citation

Bardou P, Laguerre S, Maman Haddad S, Legoueix Rodriguez S, Laville E, Dumon C, Potocki-Veronese G, Klopp C.
MINTIA: a metagenomic INserT integrated assembly and annotation tool.
PeerJ. 2021 Sep 27;9:e11885. doi: 10.7717/peerj.11885. PMID: 34692239; PMCID: PMC8483015.

BIU 2.3.7 – Bioinformatic Utility Library

BIU 2.3.7

:: DESCRIPTION

BIU (Bioinformatic Utility Library) is a C++ programming library provides a classes and functions often used in the bioinformatics context. It collects data structures and class hierarchies for biomolecule modelling and general usefull functionalities as program parameter parsing, string conversions, etc.

::DEVELOPER

Chair for Bioinformatics Freiburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

BIU

:: MORE INFORMATION

SeqHound 3.02 – Bioinformatics Database Warehouse Resource

SeqHound 3.02

:: DESCRIPTION

SeqHound is a freely available bioinformatics database warehouse resource that collects bioinformatics data from a number of sources including the National Center for Biotechnology Information and the Gene Ontology Consortium. It is designed for programmers who need unrestricted access to up-to-date data.

::DEVELOPER

Department of Biochemistry, University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
Perl
Java

:: DOWNLOAD

SeqHound

:: MORE INFORMATION

Citation

Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW.
SeqHound: biological sequence and structure database as a platform for bioinformatics research.
BMC Bioinformatics. 2002 Oct 25;3:32. Epub 2002 Oct 25.