Biogrep 1.0 – Optimised Version of Grep for matching Patterns against Sequences

Biogrep 1.0

:: DESCRIPTION

Biogrep is a tool designed to quickly match large sets of patterns against biosequence databases and is optimized for multi–processor computers. Biogrep uses standard POSIX extended regular expressions and can divide the pattern–matching task between a user–specified number of processors.

::DEVELOPER

The Bioinformatics & Metabolic Engineering Laboratory, Massachusetts Institute of Technology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Biogrep

:: MORE INFORMATION

Citation:

Kyle Jensen et. al. (2002);
Biogrep: A multi-threaded pattern matcher for large pattern sets