BEDTools 2.30.0 – Compare Genomic Features

BEDTools 2.30.0

:: DESCRIPTION

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BEDGFF/GTFVCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by “streaming” several BEDTools together.

::DEVELOPER

The Quinlan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 BEDTools

:: MORE INFORMATION

Citation:

Quinlan AR and Hall IM, 2010.
BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinformatics. 26, 6, pp. 841–842.

Pybedtools 0.8.0 – Python extension to BEDTools

Pybedtools 0.8.0

:: DESCRIPTION

Pybedtools is a Python wrapper for Aaron Quinlan’s BEDtools and extends these “genome algebra” programs by offering feature-level manipulations from with Python.

::DEVELOPER

The Quinlan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Python

:: DOWNLOAD

 Pybedtools

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Dec 15;27(24):3423-4. doi: 10.1093/bioinformatics/btr539
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
Dale RK, Pedersen BS, Quinlan AR.