:: DESCRIPTION
BMDE is a Bayesian hierarchical model for the inference on the differential gene expression based on RNA-Seq data
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Cancer Inform. 2011;10:205-15. doi: 10.4137/CIN.S7473. Epub 2011 Aug 1.
On differential gene expression using RNA-Seq data.
Lee J1, Ji Y, Liang S, Cai G, Müller P.
:: DESCRIPTION
BM-BC is a Bayesian method of base calling for Solexa-GA sequencing data. The Bayesian method builds on a hierarchical model that accounts for three sources of noise in the data, which are known to affect the accuracy of the base calls: fading, phasing, and cross-talk between channels.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2012;13 Suppl 13:S6. doi: 10.1186/1471-2105-13-S13-S6. Epub 2012 Aug 24.
BM-BC: a Bayesian method of base calling for Solexa sequence data.
Ji Y, Mitra R, Quintana F, Jara A, Mueller P, Liu P, Lu Y, Liang S.
:: DESCRIPTION
Ancestor is a software which infer ancestral amino acid sequences from a set of homologous amino acid sequences whose phylogenetic relationships are known.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Zhang J, Nei M (1997)
Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods.
J Mol Evol 44(Suppl 1):S139-S146
:: DESCRIPTION
Anc-gene is a software for inference of ancestral nucleotide sequences of protein coding genes from a set of present-day sequences whose phylogenetic relationships are known. It first infers the amino acids by the distance-based Bayesian method, and then infers the underlying nucleotide sequences by fixing the inferred amino acids.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Zhang J, Rosenberg HF, Nei M (1998)
Positive Darwinian selection after gene duplication in primate ribonuclease genes.
Proc. Natl. Acad. Sci. USA 95:3708-3713.
