XPEB 0.1.1 – Cross-population Empirical Bayes

XPEB 0.1.1

:: DESCRIPTION

XPEB is an empiral Bayes approach that integrates information from two GWAS studies, a base- and a target-GWAS conducted in different ethnic groups, to improve the detection of associations in the target-GWAS.

:: DEVELOPER

Tang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
R package

:: DOWNLOAD

XPEB

:: MORE INFORMATION

Citation

Coram MA, Candille SI, Duan Q, Chan KH, Li Y, Kooperberg C, Reiner AP, Tang H.
Leveraging Multi-ethnic Evidence for Mapping Complex Traits in Minority Populations: An Empirical Bayes Approach.
Am J Hum Genet. 2015 May 7;96(5):740-52.

EBChangePoint 0.1.0 – Empirical Bayes Change-point Model

EBChangePoint 0.1.0

:: DESCRIPTION

EBChangePoint could efficiently pool information across genes to improve detection efficiency.

::DEVELOPER

EBChangePoint team

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

EBChangePoint

:: MORE INFORMATION

Citation:

An empirical Bayes change-point model for identifying 3′ and 5′ alternative splicing by next-generation RNA sequencing.
Zhang J, Wei Z.
Bioinformatics. 2016 Feb 11. pii: btw060.

Bayes – Modeling Incomplete Alignments in Phylogenetic Inference

Bayes

:: DESCRIPTION

Bayes is a statistical method for inferring phylogenetic trees from EST-based incomplete MSA data.

::DEVELOPER

Mayetri Gupta

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows/ MacOsX
R package

:: DOWNLOAD

Bayes

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Mar 1;25(5):592-8. doi: 10.1093/bioinformatics/btp015.
A hierarchical model for incomplete alignments in phylogenetic inference.
Cheng F, Hartmann S, Gupta M, Ibrahim JG, Vision TJ.