BaTS 1.0 – Measure and Test Phylogeny Trait Associations

BaTS 1.0

:: DESCRIPTION

BaTS (Bayesian Tip-Significance testing) is a package that allows the user to test for significant phylogeny-trait correlations whilst taking into account uncertainty arising from phylogenetic error, by integrating over the credible set of topologies produced by Bayesian phylogenetics programs such as BEAST or MrBayes. Null distributions are generated for statistics of phylogeny-trait association, and used to test the significance of the observed data. BaTS can also perform batch analyses of multiple data sets.

::DEVELOPER

Joe Parker

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / MacOsX / Linux
Java

:: DOWNLOAD

BaTS

:: MORE INFORMATION

Citation:

Parker J, Rambaut A, Pybus OG. 2008.
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty.
Infection, Genetics and Evolution 8:239-46

BATS 20080710 – Bayesian Analysis of Time Series Microarray experiments

BATS 20080710

:: DESCRIPTION

BATS is a new user friendly GUI software for Bayesian Analysis of Time Series microarray experiments. It implements a truly functional fully Bayesian approach which allows an user to automatically identify and estimate differentially expressed genes.

::DEVELOPER

BioinfoLab

:: SCREENSHOTS

:: REQUIREMENTS

Linux/ Windows/ MacOsX
MatLab

:: DOWNLOAD

BATS

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2008 Oct 6;9:415. doi: 10.1186/1471-2105-9-415.
BATS: a Bayesian user-friendly software for analyzing time series microarray experiments.
Angelini C1, Cutillo L, De Canditiis D, Mutarelli M, Pensky M.

BATS – A Basic Analysis Toolkit for Biological Sequences

BATS

:: DESCRIPTION

BATS consists of a collection of libraries that can be used to run basic sequence analysis tasks. Routines for global alignment (LCS from Fragments, Edit Distance with Gaps), local alignment (approximata string matching with K mismateches or differences), and statistical analysis (Filter, Z-Score and Model Generation ) are included.

::DEVELOPER

Raffaele Giancarlo

:: SCREENSHOTS

:: REQUIREMENTS

Linux / MacOSX / Windows
Perl

:: DOWNLOAD

BATS

:: MORE INFORMATION

Citation

Algorithms Mol Biol. 2007 Sep 18;2:10.
A basic analysis toolkit for biological sequences.
Giancarlo R1, Siragusa A, Siragusa E, Utro F.