Suspenders 0.2.2
:: DESCRIPTION
Suspenders is a tool for merging two BAM files
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux/MacOsX
- Python
:: DOWNLOAD
:: MORE INFORMATION
Tag: BAM files
Portcullis 1.2.2 – Splice Junction Analysis and Filtering from BAM files
Portcullis 1.2.2
:: DESCRIPTION
Portcullis stands for PORTable CULLing of Invalid Splice junctions from pre-aligned RNA-seq data. It is known that RNAseq mapping tools generate many invalid junction predictions, particularly in deep datasets with high coverage over splice sites.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gigascience. 2018 Dec 1;7(12). doi: 10.1093/gigascience/giy131.
Efficient and accurate detection of splice junctions from RNA-seq with Portcullis.
Mapleson D, Venturini L, Kaithakottil G, Swarbreck D.
BAMTOOLS 2.5.1 – C++ API and Toolkit for Analyzing and Managing BAM files
BAMTOOLS 2.5.1
:: DESCRIPTION
BamTools provides both a programmer’s API and an end-user’s toolkit for handling BAM files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- C++ Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2011 Jun 15;27(12):1691-2. Epub 2011 Apr 14.
BamTools: a C++ API and toolkit for analyzing and managing BAM files.
Barnett DW, Garrison EK, Quinlan AR, , Strömberg MP, Marth GT.