bam2fastq 1.1.0
:: DESCRIPTION
bam2fastq is a program to extract sequences and qualities from a BAM file.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- C++ Compiler
:: DOWNLOAD
:: MORE INFORMATION
Tag: BAM File
Alview 20160628 – Alignment View for BAM files
Alview 20160628
:: DESCRIPTION
Alview (Alignment Viewer) is a fast,portable tool for viewing short reads as native GUI program
:: DESCRIPTION
National Cancer Informatics Program
:: SCREENSHOTS
:: REQUIREMENTS
- Windows/Linux/ MacOsX
:: DOWNLOAD
:: MORE INFORMATION
Citation
Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files.
Finney RP, Chen QR, Nguyen CV, Hsu CH, Yan C, Hu Y, Abawi M, Bian X, Meerzaman DM.
Cancer Inform. 2015 Sep 13;14:105-7. doi: 10.4137/CIN.S26470.
Quip 1.1.8 – Aggressive Compression of FASTQ and SAM/BAM files
Quip 1.1.8
:: DESCRIPTION
Quip compresses next-generation sequencing data in the FASTQ and SAM/BAM formats with extreme prejudice.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2012 Dec;40(22):e171. doi: 10.1093/nar/gks754. Epub 2012 Aug 16.
Compression of next-generation sequencing reads aided by highly efficient de novo assembly.
Jones DC, Ruzzo WL, Peng X, Katze MG.
Samscope 1.6.6.91 – Lightweight SAM/BAM File Viewer
Samscope 1.6.6.91
:: DESCRIPTION
Samscope is a lightweight SAM/BAM file viewer that makes visually exploring next generation sequencing data intuitive and maybe even fun!Samscope uses multiple layers to simultaneously (or sequentially) view SAM/BAM related features like coverage or allele frequency, or ChIP-SEQ features like polarity. The paging-friendly binary file layout makes it feasible to browse data sets far larger than the system’s available RAM.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 May 1;28(9):1276-7. doi: 10.1093/bioinformatics/bts122. Epub 2012 Mar 13.
SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.
Popendorf K, Sakakibara Y.