KvarQ 0.12.2
:: DESCRIPTION
The program KvarQ performs rapid in silico genotyping for selected loci (e.g. phylogenetic SNPs, drug resistance mutations) in bacterial genome sequences in FastQ format. Mapping to a whole-genome reference sequence or de novo assembly or the short reads is not necessary.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux/MacOsX
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2014 Oct 9;15(1):881. doi: 10.1186/1471-2164-15-881.
KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.
Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S