HEC 2.0.1 – Haploid Simulation of Bacterial Communities

HEC 2.0.1

:: DESCRIPTION

HEC (Haploid Evolutionary Constructor)  is the tool for simulation of bacterial (more exactly prokaryotic) communities. It is based on the original modeling approach investigated in the Laboratory of molecular-genetic systems at the Institute of Cytology and Genetics (Novosibirsk, Russia).

::DEVELOPER

HEC Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 HEC

:: MORE INFORMATION

Citation:

Simulation of coevolution in community by using the “Evolutionary Constructor” program.
Lashin SA, Suslov VV, Kolchanov NA, Matushkin YG.
In Silico Biol. 2007;7(3):261-75.

SEK – Bacterial Community Composition

SEK

:: DESCRIPTION

SEK is a software for sparsity exploiting k-mer-based estimation of bacterial community composition.

::DEVELOPER

SEK team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX /Windows
  • MatLab

:: DOWNLOAD

  SEK

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 7. [Epub ahead of print]
SEK: Sparsity exploiting k-mer-based estimation of bacterial community composition.
Chatterjee S1, Koslicki D, Dong S, Innocenti N, Cheng L, Lan Y, Vehkaper? M, Skoglund M, Rasmussen LK, Aurell E, Corander J.

BEBaC 20130425 – Estimate Bacterial Community Composition from 454 Sequencing data

BEBaC 20130425

:: DESCRIPTION

BEBaC (Bayesian Estimation of Bacterial Communities) is a software for estimating bacterial community composition from 454 sequencing data.

::DEVELOPER

Bayesian Statistics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 BEBaC

:: MORE INFORMATION

Citation:

Lu Cheng, Alan W. Walker and Jukka Corander
Bayesian estimation of bacterial community composition from 454 sequencing data
Nucl. Acids Res. (2012) 40 (12): 5240-5249.