:: DESCRIPTION
MultiScan: Multiple species motif scanning with heterogeneous background constructed by HtBackground.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Chen, G. and Zhou, Q.
Heterogeneity in DNA Multiple Alignments: Modeling, Inference, and Applications in motif finding.
Biometrics, 66: 694-704.
:: DESCRIPTION
EagleEye removes background MS/MS spectra by comparing them with a non-annotated collection of spectra, obtained from combined LC-MS/MS runs of control in-gel digests as well as identified in on-going proteomis projects.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Junqueira, M., Spirin, V., Balbuena, T. S., Waridel, P., Surendranath, V., Kryukov, G., Adzhubei, I., Thomas, H., Sunyaev, S. and Shevchenko, A.
Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification.
J Proteome Res. 2008 Aug;7(8):3382-95. Epub 2008 Jun 18.
:: DESCRIPTION
FPB is a new data-independent tool suitable for large scale projects as well as mapping of few clones.
::DEVELOPER
Istituto di Genomica Applicata
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Automated FingerPrint Background removal: FPB.
Scalabrin S, Morgante M, Policriti A.
BMC Bioinformatics. 2009 Apr 30;10:127.
:: DESCRIPTION
BackCLIP is a tool to identify the presence of common RNA background in a PAR-CLIP dataset.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BackCLIP: a tool to identify common background presence in PAR-CLIP datasets.
Reyes-Herrera PH, Speck-Hernandez CA, Sierra CA, Herrera S.
Bioinformatics. 2015 Jul 29. pii: btv442.
:: DESCRIPTION
RABIT is a very efficient feature selection algorithm. It was applied to find tumor associated regulators in diverse cancer types.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Inference of transcriptional regulation in cancers.
Jiang P, Freedman ML, Liu JS, Liu XS.
Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7731-6. doi: 10.1073/pnas.1424272112.