ParaAT 2.0 – Parallel Alignment & back-Translation

ParaAT 2.0

:: DESCRIPTION

 ParaAT (Parallel Alignment and back-Translation) is a parallel tool that parallelly constructs protein-coding DNA alignments for a large number of homologs. ParaAT is well suited for large-scale data analysis in the high-throughput era, providing good scalability and exhibiting high parallel efficiency for computationally demanding tasks.

::DEVELOPER

The National Genomics Data Center (NGDC)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • WIndows/ Linux / MacOsX
  • Perl

:: DOWNLOAD

  ParaAT

:: MORE INFORMATION

Citation

Biochem Biophys Res Commun. 2012 Mar 23;419(4):779-81. Epub 2012 Feb 27.
ParaAT: a parallel tool for constructing multiple protein-coding DNA alignments.
Zhang Z, Xiao J, Wu J, Zhang H, Liu G, Wang X, Dai L.

path 20140624 – Protein Back-translation and Alignment

path 20140624

:: DESCRIPTION

PATH is a tool that addresses the problem of finding distant protein homologies where the divergence is the result of frameshift mutations and substitutions.

::DEVELOPER

Bonsai Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/MacOsX / Linux
  • Java

:: DOWNLOAD

 path

:: MORE INFORMATION

Citation

Algorithms Mol Biol. 2010 Jan 4;5(1):6. doi: 10.1186/1748-7188-5-6.
Back-translation for discovering distant protein homologies in the presence of frameshift mutations.
Girdea M, Noe L, Kucherov G.