ASSP 1.0 – Analysis of Secondary Structure Elements in Proteins

ASSP 1.0

:: DESCRIPTION

ASSP is a Java application for analysis of secondary structure of three-dimensional protein models. It is based on the algorithm used in DSSP (Kabsch & Sander, 1983). A user-supplied structure in form of a PDB file will be analysed for H-bonding and geometric parameters to deliver a secondary structure assignment.

::DEVELOPER

Hofmann Laboratory, Eskitis Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

linux/ Windows/ MacOsX
Java

:: DOWNLOAD

ASSP

:: MORE INFORMATION

Citation

Wang, C.K., Hofmann, A. (2014)
An integrated Java tool for generating amino acid sequence alignments with mapped secondary structure elements.
3Biotech 5, 87-92.

assp 1.2 – Assess Protein Secondary Structure Prediction Accuracy

assp 1.2

:: DESCRIPTION

assp (Assess Secondary Structure Prediction) takes a multiple protein sequence alignmentand estimates the range in accuracy that one can expect for a “perfect” secondary structure prediction made using the alignment.

::DEVELOPER

The Barton Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

assp

:: MORE INFORMATION

Citation:

Russell, R. B. and Barton, G. J. (1993),
J. Mol. Biol., 234, 951-957,
“The Limits of Protein Structure Prediction Accuracy From Multiple Sequence Alignment”