:: DESCRIPTION
FAMHAP is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis).
::DEVELOPER
Tim Becker , Institute for Medical Biometry, Informatics and Epidemiology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Herold C, Becker T (2009)
Genetic association analysis with FAMHAP: a major program update.
Bioinformatics 1;25(1):134-6
:: DESCRIPTION
HPM (Haplotype Pattern Mining) is a program for gene mapping in case-control haplotype data.
TreeDT (Tree Disequilibrium Test) extracts, essentially in the form of substrings and prefix trees, information about historical recombinations in the population.
::DEVELOPER
Group of Data mining in genetics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hannu T. T. Toivonen et al,
Data mining applied to linkage disequilibrium mapping
Am J Hum Genet. 2000 July; 67(1): 133–145.
Sevon et al.
TreeDT: Tree pattern mining for gene mapping”
IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):174-85.
:: DESCRIPTION
GHOST is a software package for family-based genome-wide association analysis, with the ability to infer missing genotypes using Elston-Stewart algorithm. Highly efficient univariate and multivariate polygenic analysis has been recently implemented.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Chen WM, Abecasis GR (2007)
Family-based association tests for genomewide association scans.
Am J Hum Genet 81:913-926
