Tag: Arlequin

Arlequin 3.5.2.2 – Population Genetics Data Analysis

Arlequin 3.5.2.2

:: DESCRIPTION

Arlequin is an exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data).

The goal of Arlequin is to provide the average user in population genetics with quite a large set of basic methods and statistical tests, in order to extract information on genetic and demographic features of a collection of population samples.

::DEVELOPER

Computational and Molecular Population Genetics Lab, University of Bern

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Arlequin

:: MORE INFORMATION

Citation

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
Excoffier L, Lischer HE.
Mol Ecol Resour. 2010 May;10(3):564-7. doi: 10.1111/j.1755-0998.2010.02847.x.

Haplotyper 1.0 – Genotype Format Data from an Excel File to a Format of Arlequin

Haplotyper 1.0

:: DESCRIPTION

Haplotyper (Genotype Transposer) is an excel macro that will format data from an Excel spreadsheet to a format ready to be used by the program “Arlequin“, which will reconstruct haplotype frequencies within the population, based on the genotypes given.  After which, other macros will extract the haplotype information, calculate linkage disequilibrium between markers, and prepare an input sheet for the “GOLD” program, which makes a graphical display of this data.  Then, a last macro can reconstruct the haplotypes of each individual in the population, using a maximum likelihood method and the haplotypes present in the population as proposed by Arlequin.

::DEVELOPER

David G. Cox

:: SCREENSHOTS

:: REQUIREMENTS

  • EXCEL

:: DOWNLOAD

Haplotyper

:: MORE INFORMATION

haplotyper has evolved into PHARE