BiasViz 2 – Protein Amino Acid Bias Analysis Applet

BiasViz 2

:: DESCRIPTION

BiasViz can be used to look at the composition of amino acids within a sliding window given a multiple sequence alignment. The window size and amino acid(s) of interest can be modified and the results are displayed in real time, allowing the user to tweak both of these parameters to their liking. The values can also be downloaded as a CSV file which allows further visualization in a separate program such as Microsoft Excel.

::DEVELOPER

Matthew R. Huska

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 BiasViz

:: MORE INFORMATION

Citation

BiasViz: visualization of amino acid biased regions in protein alignments.
Huska MR, Buschmann H, Andrade-Navarro MA.
Bioinformatics. 2007 Nov 15;23(22):3093-4. Epub 2007 Oct 6.

Chemis3D 2.89b – Java 3D Molecular Viewer Applet

Chemis3D 2.89b

:: DESCRIPTION

Chemis3D is a Java Applet which renders virtual 3D molecular models within a Web document. It is specially designed for open interactive molecular visualization on the Internet or via an intranet. Molecular structures can be manipulated in real-time and rendered in various styles and appearances.

Chemis3D is a small applet running well on any Java-enabled browser and requiring no specialized plug-in nor professional applications.

Features

  • Real-time manipulation and fast 3D rendering.
  • Wide variety of molecular representations including special styles and color coding schemes for proteins and nucleic acids .
  • Enhanced interface using popumenu and key shortcuts .
  • Multi-models display and molecular animation capabilities.
  • Measuring and analysing tools.
  • Support of the most popular molecular data formats :Brookhaven Protein DataBank (*.pdb).MSC XMol files (*.xyz).MDL molfiles (*.mol).

::DEVELOPER

Didier COLLOMB

:: SCREENSHOTS

:: REQUIREMENTS

  • Java-enabled browser

:: DOWNLOAD

Chemis3D 2.89b

:: MORE INFORMATION

Chemis3D MAY BE FREELY USED FOR PERSONNAL, ACADEMIC AND NON-COMMERCIAL PURPOSES, IN AGREEMENT WITH THE FOLLOWING RESTRICTIONS.