NanoARG – Antimicrobial Resistance analysis for Nanopore reads

NanoARG

:: DESCRIPTION

NanoARG is an free web resource for the analysis of antibiotic resistance genes in metagenomes from environmental samples using the MinION nanopore sequencing technology.

::DEVELOPER

Professor Zhang Liqing’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

Arango-Argoty GA, Dai D, Pruden A, Vikesland P, Heath LS, Zhang L.
NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes.
Microbiome. 2019 Jun 7;7(1):88. doi: 10.1186/s40168-019-0703-9. PMID: 31174603; PMCID: PMC6555988.

ARIBA 2.14.4 – Antimicrobial Resistance Identification By Assembly

ARIBA 2.14.4

:: DESCRIPTION

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies.

::DEVELOPER

Pathogen Informatics, Wellcome Trust Sanger Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

ARIBA

:: MORE INFORMATION

Citation

J Glob Antimicrob Resist. 2019 Sep 7;19:129-131. doi: 10.1016/j.jgar.2019.09.001. [Epub ahead of print]
Draft genome of a macrolide resistant XDR Salmonella enterica serovar Paratyphi A strain using a shotgun sequencing approach.
Khatoon A, Malik HMT, Aurongzeb M, Raza SA, Karim A.