RSEQtools 0.6

:: DESCRIPTION

RSEQtools is a suite of tools that use Mapped Read Format (MRF) for the analysis of RNA-Seq experiments. MRF was developed to address privacy concerns associated with the potential for mRNA sequence reads to identify and genetically characterise specific individuals; it is a compact data summary format that enables anonymization of confidential sequence information, while maintaining the ability to conduct subsequent functional genomics studies. RSEQtools provides a suite of modules that convert to/from MRF data and perform common tasks such as calculating gene expression values, generating signal tracks of mapped reads, and segmenting that signal into actively transcribed regions.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• GSL
• BLAT

:: DOWNLOAD

 RSEQtools

:: MORE INFORMATION

Citation:

Lukas Habegger*, Andrea Sboner*, Tara A. Gianoulis, Joel Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein.
RSEQtools: A modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
Bioinformatics (2011) 27 (2): 281-283.