:: DESCRIPTION
ELAI performs local ancestry inference for admixed individuals.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genetics. 2014 Mar;196(3):625-42. doi: 10.1534/genetics.113.160697. Epub 2014 Jan 3.
Detecting structure of haplotypes and local ancestry.
Guan Y.
:: DESCRIPTION
ALLOY (Accurate Local Ancestry Inference) is a fast and accurate method for local ancestry inference, which is the problem of labeling each position of the genome with an ancestral origin.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
J Comput Biol. 2013 Mar;20(3):199-211. doi: 10.1089/cmb.2012.0088.
Ancestry inference in complex admixtures via variable-length Markov chain linkage models.
Rodriguez JM, Bercovici S, Elmore M, Batzoglou S.
:: DESCRIPTION
RFMix is a powerful discriminative modeling approach that is faster (~30×) and more accurate than existing methods.RFMix is capable of learning from the admixed samples themselves to boost performance and autocorrect phasing errors. RFMix shows high sensitivity and specificity in simulated Hispanics/Latinos and African Americans and admixed Europeans, Africans, and Asians.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Am J Hum Genet. 2013 Aug 8;93(2):278-88. doi: 10.1016/j.ajhg.2013.06.020. Epub 2013 Aug 1.
RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference.
Maples BK1, Gravel S, Kenny EE, Bustamante CD.
