MLAMP – Predicting AMPs Multi-labeled And Unbalanced By Smote-MLKNN

MLAMP

:: DESCRIPTION

MLAMP is a 2-layer predictor: the 1st layer prediction engine is for identifying a query protein sequence as AMP or non-AMP; if it is a AMP protein, the process will be automatically continued with the 2nd-layer prediction engine to further identify its type among the following five main functional classes:

(1) anitbacterial peptid;
(2) anticancer/tumor peptid;
(3) antifungal peptid;
(4) antiHIV peptid;
(5) antiviral;

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Lin W, Xu D.
Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types.
Bioinformatics. 2016 Dec 15;32(24):3745-3752. doi: 10.1093/bioinformatics/btw560. Epub 2016 Aug 26. PMID: 27565585; PMCID: PMC5167070.

iAMP-2L – Identifying AMPs and their Functional Types

iAMP-2L

:: DESCRIPTION

The web-server iAMP-2L is a two-level multi-label predictor. It can be used to identify an uncharacterized peptide as antimicrobial peptide (AMP) or non-AMP according to its sequences information alone.

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Anal Biochem. 2013 May 15;436(2):168-77. doi: 10.1016/j.ab.2013.01.019. Epub 2013 Feb 6.
iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types.
Xiao X1, Wang P, Lin WZ, Jia JH, Chou KC.

AMPS D2.3a – Alignment of Multiple Protein Sequences

AMPS D2.3a

:: DESCRIPTION

AMPS (Alignment of Multiple Protein Sequences) is a suite of programs for multiple sequence alignment. The programs include options to incorporate non-sequence information such as secondary structures. AMPS also implements flexible pattern matching and database scanning options. AMPS includes functions for running randomisations to estimate the significance of sequence similarities.

::DEVELOPER

The Barton Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

AMPS

:: MORE INFORMATION

Citation:

Barton, G. J. (1990),
“Protein Multiple Sequence Alignment and Flexible Pattern Matching“,
Meth. Enzymol., 183, 403-428.