AMOS 3.1.0 – Whole Genome Shotgun Assembler

AMOS 3.1.0

:: DESCRIPTION

AMOS (A Modular, Open-Source) consortium is committed to the development of open-source whole genome assembly software. The project acronym (AMOS) represents our primary goal — to produce A Modular, Open-Source whole genome assembler.Open-source so that everyone is welcome to contribute and help build outstanding assembly tools, and modular in nature so that new contributions can be easily inserted into an existing assembly pipeline. This modular design will foster the development of new assembly algorithms and allow the AMOS project to continually grow and improve in hopes of eventually becoming a widely accepted and deployed assembly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

::DEVELOPER

AMOS Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

AMOS

:: MORE INFORMATION

Citation

Next generation sequence assembly with AMOS.
Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M.
Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit 11.8. doi: 10.1002/0471250953.bi1108s33.

MetAMOS 1.5rc3 – Metagenomic Assembly pipeline for AMOS

MetAMOS 1.5rc3

:: DESCRIPTION

MetAMOS is an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations.

::DEVELOPER

Treangen Lab

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Linux
  • Java
  • Perl 

:: DOWNLOAD

 MetAMOS

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 May 3;15:126. doi: 10.1186/1471-2105-15-126.
Automated ensemble assembly and validation of microbial genomes.
Koren S1, Treangen TJ, Hill CM, Pop M, Phillippy AM.

Genome Biol. 2013 Jan 15;14(1):R2.
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
Treangen TJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM, Pop M.

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