Tag: AMIGO

RamiGO 1.20.0 – AmiGO Visualization Interface for R

RamiGO 1.20.0

:: DESCRIPTION

RamiGO is an R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape.

::DEVELOPER

Princess Margaret Bioinformatics and Computational Genomics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R/Bioconductor

:: DOWNLOAD

 RamiGO

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Mar 1;29(5):666-8. doi: 10.1093/bioinformatics/bts708. Epub 2013 Jan 6.
RamiGO: an R/Bioconductor package providing an AmiGO visualize interface.
Schröder MS, Gusenleitner D, Quackenbush J, Culhane AC, Haibe-Kains B.

AMIGO2 R2019b – Advanced Modelling and Identification using Global Optimization

AMIGO2 R2019b

:: DESCRIPTION

AMIGO is a multi-platform (Windows and Linux) toolbox which covers all the steps of the iterative identification procedure: local and global sensitivity analysis, local and global ranking of parameters, parameter estimation, identifiability analysis and optimal experimental design.

::DEVELOPER

(Bio)Process Engineering group, IIM-CSIC

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Matlab

:: DOWNLOAD

 AMIGO

:: MORE INFORMATION

Citation:

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.
Balsa-Canto E, Henriques D, Gabor A, Banga JR.
Bioinformatics. 2016 Jul 4. pii: btw411.

Bioinformatics (2011)doi: 10.1093/bioinformatics/btr370 First published online: June 17, 2011
AMIGO, a toolbox for Advanced Model Identification in systems biology using Global Optimization
Eva Balsa-Canto and Julio R. Banga