ADTEx 2.0 – Aberration Detection in Tumour Exome

ADTEx 2.0

:: DESCRIPTION

ADTEx is a freely available software package coded using R statistical language and Python to detect somatic copy number variations (CNVs) and genotypes in tumour whole exome samples. ADTEx is suitable for paired tumour/matched normal samples.

::DEVELOPER

Kaushalya Amarasinghe <kaushalya.amarasinghe@unimelb.edu.au>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
  • Python
  • BedTOol

:: DOWNLOAD

 ADTEx

:: MORE INFORMATION

Citation:

BMC Genomics. 2014 Aug 28;15:732. doi: 10.1186/1471-2164-15-732.
Inferring copy number and genotype in tumour exome data.
Amarasinghe KC, Li J, Hunter SM, Ryland GL, Cowin PA, Campbell IG, Halgamuge SK