SABER + 12_14 – Inferring Locus-specific Ancestry in Admixed Individuals

SABER + 12_14

:: DESCRIPTION

SABER+ implements a Markov-Hidden Markov Model for inferring locus-specific ancestry in admixed individuals

:: DEVELOPER

Tang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R package

:: DOWNLOAD

 SABER

:: MORE INFORMATION

Citation

Am J Hum Genet. 2006 Jul;79(1):1-12. Epub 2006 May 17.
Reconstructing genetic ancestry blocks in admixed individuals.
Tang H1, Coram M, Wang P, Zhu X, Risch N.

RelateAdmix 0.14 / Relate 0.9992 – Estimating Relatedness between Admixed Individuals

RelateAdmix 0.14 / Relate 0.9992

:: DESCRIPTION

Relate is a method which estimates the probability of sharing alleles identity by descent (IBD) across the genome and can also be used for mapping disease loci using distantly related individuals

RelateAdmix is a software package for inferring relatedness between pairs of individuals even if the individuals are admixed.

::DEVELOPER

RelateAdmix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler / R

:: DOWNLOAD

  RelateAdmixRelate

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 1;30(7):1027-8. doi: 10.1093/bioinformatics/btt652. Epub 2013 Nov 8.
RelateAdmix: a software tool for estimating relatedness between admixed individuals.
Moltke I1, Albrechtsen A.

Anders Albrechtsen, Thorfinn Sand Korneliussen, Ida Moltke, Thomas van Overeem Hansen, Finn Cilius Nielsen, Rasmus Nielsen.
Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium.
Genet Epidemiol. 2009 Apr;33(3):266-74