ACCUSA 20140930 / ACCUSA2

:: DESCRIPTION

ACCUSA is designed for accurate SNP calling on draft genome sequences.The main objective is to rule out pseudo SNPs where the reference genome has low sequencing base quality. This is obtained using a Bayesian framework considering the base quality values of the resequencing reads as well as the base quality of the reference genome.

ACCUSA2: Multi-purpose SNV calling enhanced by probabilistic integration of quality scores

::DEVELOPER

BIMSB Bioinformatics Core.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / Mac OsX
• Java 

:: DOWNLOAD

  ACCUSA , ACCUSA2

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 May 15;26(10):1364-5. Epub 2010 Apr 1.
ACCUSA–accurate SNP calling on draft genomes.
Fröhler S, Dieterich C.

Bioinformatics. 2013 Jul 15;29(14):1809-10. doi: 10.1093/bioinformatics/btt268. Epub 2013 May 16.
ACCUSA2: multi-purpose SNV calling enhanced by probabilistic integration of quality scores.
Piechotta M, Dieterich C.