Tag: 454 Sequencing

PyroHMMsnp 1.1 – SNP Caller for Ion Torrent and 454 Sequencing data

PyroHMMsnp 1.1

:: DESCRIPTION

PyroHMMsnp is a realignment-based SNP calling method for 454 and Ion Torrent sequencing data

::DEVELOPER

Ting Chen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PyroHMMsnp

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Jul;41(13):e136. doi: 10.1093/nar/gkt372. Epub 2013 May 21.
PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.
Zeng F1, Jiang R, Chen T.

BEBaC 20130425 – Estimate Bacterial Community Composition from 454 Sequencing data

BEBaC 20130425

:: DESCRIPTION

BEBaC (Bayesian Estimation of Bacterial Communities) is a software for estimating bacterial community composition from 454 sequencing data.

::DEVELOPER

Bayesian Statistics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 BEBaC

:: MORE INFORMATION

Citation:

Lu Cheng, Alan W. Walker and Jukka Corander
Bayesian estimation of bacterial community composition from 454 sequencing data
Nucl. Acids Res. (2012) 40 (12): 5240-5249.