Sockeye 1.3 – 3D Visualization for Working with Genomic Information

Sockeye 1.3

:: DESCRIPTION

Sockeye opens up the power of 3D environments to researchers working with genomic information. Visualizing large amount of information at disparate locations in the genome while using a vast variety of algoritms makes Sockeye the number one tool for scientists working on genomic data.

::DEVELOPER

Canada’s Michael Smith Genome Sciences Centre

:: SCREENSHOTS

:: REQUIREMENTS

Linux/MacOsX/Windows
Java

:: DOWNLOAD

Sockeye

:: MORE INFORMATION

Citation

Montgomery S.B., Astakhova T., Bilenky M., Birney E., Fu T., Hassel M., Melsopp C., Rak M., Robertson A.G., Sleumer M., Siddiqui A.S., and Jones S.J.M.,
Sockeye: A 3D Environment for Comparative Genomics.
Genome Research, 2004, 14[5]:956-962.

DINO 0.9.5 – Structural Biology Data 3D Visualization

DINO 0.9.5

:: DESCRIPTION

DINO is a realtime 3D visualization program for structural biology data. DINO aims to visualize all structural datas in a single program and to allow the user to explore relationships between the data. There are five data-types supported: structure (atomic coordinates and trajectories), surface (molecular surfaces), scalar fields (electron densities and electrostatic potentials), topographs (surface topography scans) and geom (geometric primitives such as lines).

::DEVELOPER

Ansgar Philippsen at the Division of Structural Biology, Biozentrum, University of Basel, Switzerland.

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

Linux / IRIX 6.5+ / Digital OSF1 4.0+ / SunOS 5.7+ / MacOSX
OpenGL

:: DOWNLOAD

DINO ; Manual

:: MORE INFORMATION

Visual3D 1.2 – Generate 3D Visualization of Fluorescence Microscopy Images

Visual3D 1.2

:: DESCRIPTION

Visual3D uses OpenGL textures to generate a 3D visualization of confocal and wide field fluorescence microscopy images. Custom color palettes can be applied to grey value images. AVI movies can be created with a build in script engine.

::DEVELOPER

AMC, CMO, Amsterdam, The Netherlands – Contact: R.A.Hoebe -at- amc.nl

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

Visual3D

:: MORE INFORMATION

This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands