SuRankCo R5

:: DESCRIPTION

SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet.

::DEVELOPER

SuRankCo team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / MacOsX
• Java
• R

:: DOWNLOAD

SuRankCo

:: MORE INFORMATION

Citation

Kuhring M, Dabrowski PW, Piro VC, Nitsche A, Renard BY.
SuRankCo: supervised ranking of contigs in de novo assemblies.
BMC Bioinformatics. 2015 Jul 30;16:240. doi: 10.1186/s12859-015-0644-7. PMID: 26224355; PMCID: PMC4520199.