StriDe
:: DESCRIPTION
The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long reads for assembly through repetitive regions.
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::DEVELOPER
Huang YT ythuang@cs.ccu.edu.tw.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Integration of String and de Bruijn Graphs for Genome Assembly.
Huang YT, Liao CF.
Bioinformatics. 2016 Jan 10. pii: btw011.