SToRM 0.0099
:: DESCRIPTION
SToRM is a software tool primarily proposed for mapping SOLiD reads or Illumina reads to a reference genome. It was based on seeding techniques adapted to the statistical characteristics of the reads: the default seeds are for example designed (using the Iedera software) to comply with the properties of the SOLiD color encoding, or Illumina more classical encoding as well as the observed reading error distribution along the read.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / MacOsX
- C Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Noé, L. and Gîrdea,. and Kucherov, G.:
Designing efficient spaced seeds for SOLiD read mapping
Advances in Bioinformatics, Volume 2010 2010