Stampy 1.0.23 – Read Aligner capable of Gapped Alignment for Illumina Short Reads

Stampy 1.0.23

:: DESCRIPTION

Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It’s recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions. It can map reads from a highly divergent species to a reference genome for instance. Stampy achieves high sensitivity and speed by using a fast hashing algorithm and a detailed statistical model.

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::DEVELOPER

Gerton Lunter

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Stampy

:: MORE INFORMATION

Citation:

Lunter and Goodson.
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.
Genome Res. 2011. 21:936-939.

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