SPLATCHE (for SPatiaL And Temporal Coalescences in Heterogenous Environment) is a program that allows to incorporate the influence of environment in the simulation of migration of a given species from one origin. In a second phase, the molecular genetic diversity of one or several samples drawn from the simulated species can be generated.
Computational and Molecular Population Genetics Lab, University of Bern
- Windows / Linux
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Currat M, Arenas M, Quilodràn CS, Excoffier L, Ray N.
SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal.
Bioinformatics. 2019 Nov 1;35(21):4480-4483. doi: 10.1093/bioinformatics/btz311. PMID: 31077292; PMCID: PMC6821363.
Ray N, Currat M, Foll M, Excoffier L. (2010)
SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination.
Bioinformatics, Volume 26, Issue 3, Page 2993-2994.