SPARCS – Structural Profile Assignment of RNA Coding Sequences

SPARCS

:: DESCRIPTION

SPARCS is a program to analyze structured and unstructured regions in coding RNA sequences. SPARCS samples random sequences preserving both the amino acid sequence and the dinucleotide statistics that enable us to calculate accurate z-score values.

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::DEVELOPER

Computer Science and Biology at McGill

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python
  • C++ Compiler

:: DOWNLOAD

 SPARCS

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W480-5. doi: 10.1093/nar/gkt461. Epub 2013 Jun 8.
SPARCS: a web server to analyze (un)structured regions in coding RNA sequences.
Zhang Y1, Ponty Y, Blanchette M, Lécuyer E, Waldispühl J.