Spaced Words – Alignment-free Sequence Comparison

Spaced Words

:: DESCRIPTION

Spaced Words is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, Spaced Words uses a pattern of care and don’t care positions.

Advertisement

::DEVELOPER

Department of Bioinformatics ,  University of Göttingen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Spaced Words

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 3.
Fast alignment-free sequence comparison using spaced-word frequencies.
Leimeister CA1, Boden M, Horwege S, Lindner S, Morgenstern B.